DreEX6016284 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22660290-22661821:+
Coord C1 exon
chr3:22660290-22660412
Coord A exon
chr3:22661312-22661548
Coord C2 exon
chr3:22661636-22661821
Length
237 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTCTTTTCCTCCAGGTG
3' ss Score
13.64
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCTTGAGTAAGAAGGTTGGGGTTTCCTCCTCAGTGCTGCAGGGGTTGTGGGTTTCCTACAGTACAGAAGGACTCTCCACAGCTTTGGCTTCATTGAGAAACCTCTACACTCCTAATGTCAAG
Seq A exon
GTGTCTCGTCTGCTGATTATGGGTGGAGCTAATGTGAACTACCGCACAGAGGTGTTGAATAATGCACCAATCCTGTGTGTTCATGCTCACCTGGGCTACCTGGAGACTGCAGCTCTGCTGTTGGAGTTTGGGGCCGATGTAGATGGTGTTTCAGAGAGCGGACTCACTCCTCTTGGCTACGCAGCCGCCGCGGGTCACCTGTCCATCGTCACCGCTCTCTGCAGCAAGAAAGCCAAG
Seq C2 exon
GTGGATCATCTGGATAAAAACGGTCAATGTGCACTTGTTCACGCTGCTCTGCGAGGTCATCTGGAGGTGGTGAAGTATTTAGTCCAGTGTGAGTGGAATACAGACGGACAACAAGTTGGATCCTTCAGCAAGAGTCATGCAATACAACAGGCCCTCATTGCAGCAGCTAGTATGGGCTATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(6.6=14.6)
A:
PF127962=Ank_2=PU(58.1=68.4)
C2:
PF127962=Ank_2=PD(39.8=59.7),PF136371=Ank_4=PU(20.6=21.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTTGGGGTTTCCTCCT
R:
TAGCCCATACTAGCTGCTGCA
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]