GgaEX6027273 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2607661-2610366:+
Coord C1 exon
chr27:2607661-2607783
Coord A exon
chr27:2607999-2608235
Coord C2 exon
chr27:2610181-2610366
Length
237 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCTTCTGCTCTGCAGGTC
3' ss Score
9.57
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GGGCTGAGTAAAAAAGTTGGGGTGTCTTCCTCCATCCTGCAAGGGCTTTGGATCTCCTACAGCACTGAGGGTCTTTCCATGGCTTTGGCATCGCTGAGAAACCTCTACACCCCAAACATCAAG
Seq A exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
Seq C2 exon
GTGGATCACTTGGATAAGAACGGTCAGTGCGCGTTGGTCCACGCCGCCCTCCGAGGACACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGAGCATGGCTGGGCAGCAGCAGGGGGTGTTCAAAAAGAGCCACGCCATCCAGCAGGCCCTGATCGCTGCAGCCAGCATGGGCTACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'25-16,'25-15,26-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTTGGGGTGTCTTCCTCC
R:
GCTGGCTGCAGCGATCAG
Band lengths:
284-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]