BtaEX6089490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48375150-48379755:+
Coord C1 exon
chr19:48375150-48375272
Coord A exon
chr19:48376047-48376283
Coord C2 exon
chr19:48379570-48379755
Length
237 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTCTTATGACTAGGTC
3' ss Score
8.07
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGTTTGAGTAAAAAAGTTGGCGTATCATCCTCCATCCTCCAAGGCCTCTGGATCTCCTACAGCACAGAAGGTCTGTCCATGGCGTTGGCATCTTTACGAAATCTCTACACGCCAAATATAAAG
Seq A exon
GTCAGCCGACTGCTGATTTTGGGAGGTGCCAACATTAATTACCGGACAGAAGTTTTGAATAATGCTCCAATTCTGTGTGTCCAGTCTCATCTTGGTTACACAGAAATGGTGGCCCTGCTCTTGGAGTTTGGGGCCAACGTGGATGCCTCCTCTGAAAGTGGCCTGACTCCCCTGGGCTATGCCGCGGCGGCAGGCTTCCTGAGCATCGTAGTGCTGCTGTGCAAGAAACGGGCCAAG
Seq C2 exon
GTGGATCACTTAGATAAGAATGGGCAGTGCGCCCTGGTCCATGCCGCACTCCGAGGTCATCTGGAGGTCGTCAAGTTTCTCATTCAGTGTGACTGGACGATGGCGGGCCAGCAGCAGGGGGTGTTTAAGAAGAGCCACGCCATCCAGCAAGCCCTCATCGCTGCAGCCAGCATGGGTTACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(61.4=68.4)
C2:
PF127962=Ank_2=PD(36.4=51.6),PF136371=Ank_4=PU(20.6=21.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTATCATCCTCCATCCT
R:
CTCAGTGTAACCCATGCTGGC
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]