RnoEX0088544 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94087607-94094189:+
Coord C1 exon
chr10:94087607-94087707
Coord A exon
chr10:94093314-94093436
Coord C2 exon
chr10:94093953-94094189
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTTATTTTTTTCAGGGT
3' ss Score
10.25
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTAGAAATTGGATTAAAATTGGAGTCCACCCTTCTATTTTTCCGTGTGCTAGGAAGCAAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG
Seq A exon
GGTTTGAGTAAAAAGGTTGGTGTATCGTCCTCCATCCTCCAAGGACTCTGGATCTCCTATAGCACAGAAGGTCTTTCCATGGCATTGGCCTCTTTACGAAATCTCTACACTCCAAATATAAAG
Seq C2 exon
GTCAGCAGACTGCTGATTCTGGGAGGAGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCCATCCTATGTGTCCAGTCTCACCTTGGCTACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCCAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCTCTGGGATACGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'36-37,'36-36,37-37
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF127962=Ank_2=PU(58.1=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTCTATTTTTCCGTGTGCT
R:
GGAGTCAGGCCACTCTCAGAA
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]