BtaEX6089491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48372230-48376283:+
Coord C1 exon
chr19:48372230-48372338
Coord A exon
chr19:48375150-48375272
Coord C2 exon
chr19:48376047-48376283
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGTTTCTTTTTCAGGGT
3' ss Score
14.2
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGTGGTCACACATTACTTGCCTTCTGGTTTTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACAATTGAACTGGGACATCACATCCTCAAAGCACACATTTTTAAG
Seq A exon
GGTTTGAGTAAAAAAGTTGGCGTATCATCCTCCATCCTCCAAGGCCTCTGGATCTCCTACAGCACAGAAGGTCTGTCCATGGCGTTGGCATCTTTACGAAATCTCTACACGCCAAATATAAAG
Seq C2 exon
GTCAGCCGACTGCTGATTTTGGGAGGTGCCAACATTAATTACCGGACAGAAGTTTTGAATAATGCTCCAATTCTGTGTGTCCAGTCTCATCTTGGTTACACAGAAATGGTGGCCCTGCTCTTGGAGTTTGGGGCCAACGTGGATGCCTCCTCTGAAAGTGGCCTGACTCCCCTGGGCTATGCCGCGGCGGCAGGCTTCCTGAGCATCGTAGTGCTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(61.4=68.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCCTTCTGGTTTTCCCG
R:
GCCACTTTCAGAGGAGGCATC
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]