DreEX6016285 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22660017-22661548:+
Coord C1 exon
chr3:22660017-22660125
Coord A exon
chr3:22660290-22660412
Coord C2 exon
chr3:22661312-22661548
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCATTGTCTCTTGAATGCAGGGC
3' ss Score
6.33
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GAGTGGCCACACACTGCTTGCATTCTGGTTTTCACGGCAAGACAGCAAGCTTAATCGACAACAGACCCTTGAACTTGGCCACCACATTCTCAAAGCTCACATCTTTAAG
Seq A exon
GGCTTGAGTAAGAAGGTTGGGGTTTCCTCCTCAGTGCTGCAGGGGTTGTGGGTTTCCTACAGTACAGAAGGACTCTCCACAGCTTTGGCTTCATTGAGAAACCTCTACACTCCTAATGTCAAG
Seq C2 exon
GTGTCTCGTCTGCTGATTATGGGTGGAGCTAATGTGAACTACCGCACAGAGGTGTTGAATAATGCACCAATCCTGTGTGTTCATGCTCACCTGGGCTACCTGGAGACTGCAGCTCTGCTGTTGGAGTTTGGGGCCGATGTAGATGGTGTTTCAGAGAGCGGACTCACTCCTCTTGGCTACGCAGCCGCCGCGGGTCACCTGTCCATCGTCACCGCTCTCTGCAGCAAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(6.6=14.6)
C2:
PF127962=Ank_2=PU(58.1=68.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTGCTTGCATTCTGGT
R:
CCATCTACATCGGCCCCAAAC
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]