GgaEX6027274 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2522392-2525587:+
Coord C1 exon
chr27:2522392-2522500
Coord A exon
chr27:2525013-2525135
Coord C2 exon
chr27:2525351-2525587
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTCTTTTTCATAGGGG
3' ss Score
10.9
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGTGGCCACACATTGCTTGCCTTCTGGTTTTCCCGTCAGGAAGGAAAACTCAACCGACAGCAAACGATCGAATTGGGACATCACATTCTCAAAGCACACATTTTTAAG
Seq A exon
GGGCTGAGTAAAAAAGTTGGGGTGTCTTCCTCCATCCTGCAAGGGCTTTGGATCTCCTACAGCACTGAGGGTCTTTCCATGGCTTTGGCATCGCTGAGAAACCTCTACACCCCAAACATCAAG
Seq C2 exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(57.9=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTCTGGTTTTCCCGTC
R:
AGAAGCAGCATCTACGTTGGC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]