GgaEX6027274 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2605040-2608235:+
Coord C1 exon
chr27:2605040-2605148
Coord A exon
chr27:2607661-2607783
Coord C2 exon
chr27:2607999-2608235
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTCTTTTTCATAGGGG
3' ss Score
10.9
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGTGGCCACACATTGCTTGCCTTCTGGTTTTCCCGTCAGGAAGGAAAACTCAACCGACAGCAAACGATCGAATTGGGACATCACATTCTCAAAGCACACATTTTTAAG
Seq A exon
GGGCTGAGTAAAAAAGTTGGGGTGTCTTCCTCCATCCTGCAAGGGCTTTGGATCTCCTACAGCACTGAGGGTCTTTCCATGGCTTTGGCATCGCTGAGAAACCTCTACACCCCAAACATCAAG
Seq C2 exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'24-15,'24-14,25-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTCTGGTTTTCCCGTC
R:
AGAAGCAGCATCTACGTTGGC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]