BtaEX6090384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54359401-54361147:+
Coord C1 exon
chr19:54359401-54359628
Coord A exon
chr19:54360030-54360167
Coord C2 exon
chr19:54361015-54361147
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCACCCCCCCCCCAGGTC
3' ss Score
10.36
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATCACTATGACTGGGGCCTGCGAGCCATCAAGTCTGTGCTGGTGGTGGCCGGCTCCCTGAAGAGGGGCGACCCCAGCCGGGCAGAGGACCAGGTGCTGATGCGGGCGCTCAGGGACTTCAATATCCCCAAGATCGTCACCGACGACCTGCCCGTGTTCATGGGGCTCATCGGGGACCTCTTCCCCGCCCTGGATGTGCCTCGGAAACGGGACCTGAATTTTGAGAAG
Seq A exon
GTCATCAAGCAGAGCATCGTGGAGCTGCAGCTGCAGGCAGAGGACGGCTTCGTGCTGAAGGTGGTGCAGCTGGAGGAGCTGCTACAGGTCCGGCACTCGGTGTTTGTCATCGGGAACGCGGGCAGCGGCAAGTCCCAG
Seq C2 exon
GTACTCAGGTCTCTGAACAAGACCTACCAGAACCTGAAGAGGAAGCCGGTGGCCGTGGACCTGGACCCCAAGGCCGTCACCTGTGACGAACTCTTTGGCATCATCAACCCGGCGACCAGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=31.6)
A:
PF077289=AAA_5=PU(9.5=28.3)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAAGTCTGTGCTGGTGG
R:
CGGCTTCCTCTTCAGGTTCTG
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]