DreEX6020676 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10416127-10416839:-
Coord C1 exon
chr6:10416645-10416839
Coord A exon
chr6:10416458-10416535
Coord C2 exon
chr6:10416127-10416259
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTCTTCCTCTTTTAGGTG
3' ss Score
13.53
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGCTCATGCGTGCTCTTCGAGACTTTAACCTTCCGAAGGTCGTGACTAGTGATGTGCCGATATTCTTGGGACTGATAAGCGATCTCTTTCCTCTTCTGGACATCCCACGCAAGAGAGACCATCTTCTTGAGCAGAACGTACGCCAGTCGGTTGCTGAACTCCACCTCCAGCCAGAGGAAAGTTTCATACTGAAG
Seq A exon
GTGACTCAACTGGAGGAGTTGCTGGCAGTGAGACACTCCGTTTTCGTAGTAGGTGGTCCTGGATCGGGAAAAAGTCAG
Seq C2 exon
ATTTTGAAGACGCTTCATAAGACCTACTCTAACATGAAACTGAAACCTATCTGGACTGACATCAACCCTAAAGCTGTCACCACTGATGAGCTGTTTGGCTTTCTCCACCCAGCCACACGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(9.5=50.0)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGAGCAGAACGTACGCC
R:
AGCCAAACAGCTCATCAGTGG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]