HsaEX6025146 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76488715-76490902:-
Coord C1 exon
chr17:76490675-76490902
Coord A exon
chr17:76490118-76490255
Coord C2 exon
chr17:76488715-76488847
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTCATCCATGTCTCCCCAGATC
3' ss Score
10.4
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATCATTACGACTGGGGCCTGAGAGCCATCAAGTCTGTGCTGGTGGTGGCCGGCTCCCTGAAGAGGGGCGACCCCAGCCGGGCAGAGGACCAGGTGCTCATGCGGGCGCTGAGAGACTTCAACATCCCCAAGATTGTGACAGACGACCTGCCCGTATTCATGGGACTGATCGGGGACCTCTTCCCGGCTCTGGACGTGCCTCGGAAACGGGACCTGAATTTTGAAAAG
Seq A exon
ATCATCAAGCAGAGCATCGTGGAGCTCAAGCTGCAGGCGGAGGACAGCTTCGTGCTGAAGGTGGTGCAGCTGGAGGAGCTGCTGCAGGTCCGCCACTCCGTGTTCATCGTCGGGAATGCGGGCAGCGGCAAATCTCAG
Seq C2 exon
GTCCTCAAATCCCTCAACAAGACCTATCAGAACCTGAAGAGGAAGCCGGTCGCCGTGGACCTGGACCCCAAGGCCGTCACCTGCGACGAGCTCTTTGGCATCATCAACCCAGTGACCAGGGAATGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=31.6)
A:
PF077289=AAA_5=PU(9.5=28.3)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAAGTCTGTGCTGGTGG
R:
CGGCTTCCTCTTCAGGTTCTG
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)