RnoEX6050796 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107089880-107091468:-
Coord C1 exon
chr10:107091241-107091468
Coord A exon
chr10:107090639-107090776
Coord C2 exon
chr10:107089880-107090012
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCGCCTGCCGTATCTCCCAGATC
3' ss Score
9.65
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GATCATTATGACTGGGGCCTTCGGGCCATCAAGTCTGTGCTGGTGGTAGCTGGCTCCTTGAAGAGGGGAGACCCTACCCGGGCAGAGGACCAGGTGCTCATGAGGGCACTGCGAGACTTCAACATCCCCAAGATCGTGACTGATGACCTGCCTGTGTTCATGGGACTGATCGGTGACCTCTTCCCAGCTCTGGACGTGCCCCGAAAGCGAGACCTGAATTTTGAGAAG
Seq A exon
ATCATCAAGCAGAGCATCGTGGAGCTCAAGCTGCAGGCAGAAGATAGCTTTGTGCTGAAAGTCGTGCAGCTGGAGGAGCTGCTTCAAGTTCGACACTCAGTATTCGTCATTGGGAACGCAGGCAGCGGCAAATCCCAG
Seq C2 exon
GTCCTCAAATCCCTCAACAAGACCTACCAGAACATGAAGAGGAAGCCTGTGGCAGTGGACCTGGACCCAAAGGCTGTCACCTGTGATGAGCTGTTTGGTATCATCAACCCGGCGACCAGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'42-46,'42-45,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=31.6)
A:
PF077289=AAA_5=PU(9.5=28.3)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTGTGCTGGTGGTAGC
R:
GCCACAGGCTTCCTCTTCATG
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]