MmuEX6091620 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118080713-118082111:-
Coord C1 exon
chr11:118081884-118082111
Coord A exon
chr11:118081474-118081611
Coord C2 exon
chr11:118080713-118080845
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCACTACTGTGTCTCCCAGATC
3' ss Score
7.49
5' ss Seq
CAGGCACGT
5' ss Score
2.9
Exon sequences
Seq C1 exon
GACCATTATGACTGGGGCCTTCGGGCCATCAAGTCTGTGCTGGTGGTAGCCGGCTCCTTGAAGAGGGGAGACCCCACCCGGGCAGAGGACCAGGTGCTCATGAGGGCCCTGAGAGACTTCAACATCCCCAAGATCGTGACTGATGACCTGCCCGTGTTCATGGGGCTGATCGGCGACCTCTTCCCAGCTCTGGACGTGCCCCGGAAGCGAGACCTGAATTTTGAGAAG
Seq A exon
ATCATCAAACAGAGCATCGTGGAGCTCAAGCTTCAGGCAGAAGACAGCTTTGTGCTGAAAGTCGTCCAGCTGGAAGAGCTGCTTCAAGTCCGACACTCGGTCTTCGTCATTGGGAACGCGGGCAGCGGCAAATCGCAG
Seq C2 exon
GTCCTCAAATCCCTCAACAAGACCTACCAGAACCTGAAGAGGAAGCCCGTGGCGGTGGACCTGGACCCGAAGGCTGTCACCTGTGATGAGCTGTTTGGCATTATCAACCCGGCGACCAGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'53-56,'53-55,54-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=31.6)
A:
PF077289=AAA_5=PU(9.5=28.3)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGGCCCTGAGAGACTTC
R:
CTGGTCGCCGGGTTGATAATG
Band lengths:
248-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types