GgaEX7009573 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10082984-10083656:+
Coord C1 exon
chr18:10082984-10083211
Coord A exon
chr18:10083288-10083425
Coord C2 exon
chr18:10083524-10083656
Length
138 bp
Sequences
Splice sites
3' ss Seq
CAGTGCCCGCTCTCCCCCAGGTC
3' ss Score
8.5
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GACCACTACGACTGGGGTCTGCGGGCTATCAAGTCTGTGCTGGTGGTAGCGGGCTCCTTGAAGAGGGGCGACCCGAGCCGTGCCGAGGACCAGGTCCTCATGAGAGCCTTACGGGACTTCAACATCCCAAAGATCGTGACAGATGACCTGCCTGTGTTCATGGGGCTGATTGGGGACCTATTCCCTGCTCTGGACGTCCCCAGGAAGAGGGATCTGAGCTTTGAGAAG
Seq A exon
GTCATCAAGCAGTCGGTGCTGGAGCTGAAGCTGCAGGCGGAGGAGAGCTTTGTGCTGAAGGTGGTGCAGCTGGAGGAGCTGCTGCAGGTGCGGCACTCCGTCTTCGTCATCGGCAACGCCGGCTGTGGCAAATCCCAG
Seq C2 exon
GTGCTGAGGTCACTCAACAAGACGTACCGCAACATGAAGCAGAAGCCAGTCACTGTGGACCTCGACCCGAAGGCTGTGACCTGTGATGAGCTTTTTGGGGTTATCCATCCATCTACACGGGAGTGGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'43-46,'43-44,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=31.6)
A:
PF077289=AAA_5=PU(9.5=28.3)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTGTGCTGGTGGTAGC
R:
CACAGTGACTGGCTTCTGCTT
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]