BtaEX6090744 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56473344-56474458:-
Coord C1 exon
chr19:56474309-56474458
Coord A exon
chr19:56473589-56473777
Coord C2 exon
chr19:56473344-56473499
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTGTCCCCCACACAGGTG
3' ss Score
10.45
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCTCCCGCTTGGCTGCGGGTGTGCCCAACACACCCACCCGCCTGGTGTTCTCCGCCCTTGGACCCACGTCTCTGAAAGTGAGCTGGCAGGAGCCGCAGTGTGAGCGTGCGCTGCAGGGCTACAGTGTGGAGTACCAGCTGCTGAACGGCG
Seq A exon
GTGAGCTGTATCGCCTCAACATCCCCAACCCCAGCCAGACCTCGGTGGTGGTGGAGGACCTCCTGCCCAACCACTCCTACGTGTTCCGTGTGCGGGCCCAGAGCCAGGAGGGCTGGGGCCCGGAGCGTGAGGGTGTCATCACCATTGAGTCACAGGTGCACCCGCAGAGCCCGCTCTGCCCCCTGCCGG
Seq C2 exon
GCTCCGCCTTCACTTTGAGCACACCCAGCGCCCCGGGCCCGCTGGTGTTCACTGCCCTGAGCCCCGACTCGCTGCAGCTGAGCTGGGAGCGGCCCCGCAGGCCAGATGGCGACATTCTGGGCTACCTGGTGACGTGTGAGATGGCCCACGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169-'49-52,'49-51,50-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.195 C2=0.189
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.8=80.4)
A:
PF0004116=fn3=PD(50.0=65.6)
C2:
PF0004116=fn3=PU(49.4=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCACGTCTCTGAAAGT
R:
CTCCGTGGGCCATCTCACA
Band lengths:
245-434
Functional annotations
There are 1 annotated functions for this event
PMID: 11044453
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI001551; ELM sequence: LLPNHSY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]