GgaEX1030785 @ galGal4
Exon Skipping
Gene
ENSGALG00000002389 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr18:4695120-4697230:-
Coord C1 exon
chr18:4697081-4697230
Coord A exon
chr18:4696409-4696597
Coord C2 exon
chr18:4695120-4695233
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCATGTGTGTCCCAGGAG
3' ss Score
8.03
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTCCAGGTTTCCACTGGGTGTCCCTGACATCCCCACGAGGTTGGTGTTCTCTGCTCTGGGACCCACCTCGCTGAAGGTGAGCTGGCAGGAGCCGCGCTGCGAGAAGGAGGTGCAGGGCTACAGCGTGCAGTACCAGCTGCTCAATGGAG
Seq A exon
GAGAGGTGCATCGCGTCACCGTATCCAACCCCAGCCGGAACTCGGTGGTTGTGGAGAACCTGCTGCCCAACCACTCCTACATCTTCAAGGTGAAGGCACAGAGTGAGGAGGGCTGGGGCCCTGAGAGGGAAGGAGTCATCACCATAGAGTCCCAGGTGGACCCACAGAGCCCACTGAGCCCCGTTCCAG
Seq C2 exon
GTACTTTCTCCCAGTTCGGAGGACAGCAATACACAAAAGAGGTGTACAACTTCCCCACAGAATACAGCACCAAAACCAGCATCAGCCATTCCTCTCTGGACCCCCACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.458 C2=0.333
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.8=80.4)
A:
PF0004116=fn3=PD(50.0=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGTTTCCACTGGGTGT
R:
GAGAGGAATGGCTGATGCTGG
Band lengths:
245-434
Functional annotations
There are 1 annotated functions for this event
PMID: 11044453
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI001551; ELM sequence: LLPNHSY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]