GgaEX1030785 @ galGal3
Exon Skipping
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4714951-4716141:-
Coord C1 exon
chr18:4715991-4716141
Coord A exon
chr18:4715319-4715507
Coord C2 exon
chr18:4714951-4715106
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCATGTGTGTCCCAGGAG
3' ss Score
8.03
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATTCCAGGTTTCCACTGGGTGTCCCTGACATCCCCACGAGGTTGGTGTTCTCTGCTCTGGGACCCACCTCGCTGAAGGTGAGCTGGCAGGAGCCGCGCTGCGAGAAGGAGGTGCAGGGCTACAGCGTGCAGTACCAGCTGCTCAATGGAG
Seq A exon
GAGAGGTGCATCGCGTCACCGTATCCAACCCCAGCCGGAACTCGGTGGTTGTGGAGAACCTGCTGCCCAACCACTCCTACATCTTCAAGGTGAAGGCACAGAGTGAGGAGGGCTGGGGCCCTGAGAGGGAAGGAGTCATCACCATAGAGTCCCAGGTGGACCCACAGAGCCCACTGAGCCCCGTTCCAG
Seq C2 exon
GTTCACCCTTCACGCTGAGCACACCCAGTGCCCCCGGACCGCTGGTTTTCACTGCCCTCAGCCCTGACTCCCTGCAGCTCAGCTGGGAGAGACCACACAAACCCAACGGGGCCATCCTGGGTTACATGATCACCTGTGAAAGGCTGCACGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.445 C2=0.245
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.8=80.4)
A:
PF0004116=fn3=PD(50.0=65.6)
C2:
PF0004116=fn3=PU(49.4=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGTTCTCTGCTCTGGGA
R:
GCAGCCTTTCACAGGTGATCA
Band lengths:
256-445
Functional annotations
There are 1 annotated functions for this event
PMID: 11044453
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI001551; ELM sequence: LLPNHSY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]