BtaEX6091080 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61918266-61919888:+
Coord C1 exon
chr19:61918266-61918360
Coord A exon
chr19:61919042-61919161
Coord C2 exon
chr19:61919741-61919888
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTTCATTTGTATTTTGTAGGAG
3' ss Score
8.76
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
CTGTGTTTCGCCCTGAGCATGCTGGGGAACCCCCCGGTCACGCTGCTGGATGAGCCGTCCACAGGCATGGATCCCAAAGCCAAGCAGCACATGTG
Seq A exon
GAGAGCGATTAGAACCGCATTCAAAAACAGGAAGCGGGCCGCTATTCTGACCACTCACTACATGGAGGAGGCGGAGGCCGTCTGCGACCGTGTGGCCATCATGGTGTCCGGGCGGCTGAG
Seq C2 exon
GTGTATTGGGACAGTCCAGCATCTGAAGAGTAAATATGGAAAAGGATACTTTTTGGAAATCAAATTAAAGGACTGGATAGAAGACCTGGAAGTAGACCGTCTTCAAAGAGAAGTTCAGTGTATTTTCCCAAACGCAAGCCGTCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.7=62.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTTCGCCCTGAGCAT
R:
TTCCTGACGGCTTGCGTTTG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]