RnoEX6050368 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98578987-98581642:-
Coord C1 exon
chr10:98581548-98581642
Coord A exon
chr10:98580642-98580761
Coord C2 exon
chr10:98578987-98579136
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACTTTTATTCTGTTTATAGGCG
3' ss Score
7.51
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
CTGTGTTTTGCTCTCAGTATGCTGGGGAATCCTCAGGTGACACTGCTGGATGAGCCGTCTACAGGTATGGACCCCAGAGCCAAACAGCACATGTG
Seq A exon
GCGAGCCATTCGAACTGCGTTTAAAAACAAGAAGCGGGCTGCCCTCCTCACTACGCATTACATGGAAGAGGCGGAGGCTGTCTGTGACAGGGTGGCCATCATGGTGTCCGGGCAGCTAAG
Seq C2 exon
ATGCATTGGAACAGTACAACATCTAAAGAGCAAGTTTGGCAAAGGCTACTTTTTAGAAATTAAACTAAAGGACTGGATAGAAAACCTGGAAATAGATCGCCTTCAAAGAGAAATTCAATATATTTTCCCAAATGCAAGCCGCCAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'42-47,'42-46,43-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.7=62.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTGCTCTCAGTATGCTGGG
R:
GCGGCTTGCATTTGGGAAAAT
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]