DreEX6070624 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38675924-38676519:+
Coord C1 exon
chr12:38675924-38676018
Coord A exon
chr12:38676134-38676253
Coord C2 exon
chr12:38676367-38676519
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTTTTTCCTAATAGGAG
3' ss Score
10.67
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TTGTGCTTTGCACTAAGCATGCTGGGAAATCCTCAGATAGTTTTGTTGGATGAACCATCTACAGGGATGGATCCTAAATCAAAACAACGCATGTG
Seq A exon
GAGAGCAATCCGTGCTGCTTTTAAGAACAAACAGCGAGGGGCACTGTTGACCACCCATTACATGGAAGAGGCAGAGGCTGTGTGTGACCGTGTGGCGATCATGGTATCTGGTCAGCTGAG
Seq C2 exon
GTGTATTGGCTCAATCCAGCACCTGAAGGGGAAGTTTGGCCGAGGATACAGCCTAGAGATTAACCTCAGGGAGGAGCTCACAGGTCTCCAGCAGGTAGCGCTGTTGCACAAAGAGATACTGAAGATATTTCCCCATGCTGTTCGTCAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'41-43,'41-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.7=62.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATGCTGGGAAATCCTCA
R:
CTGTCCTGACGAACAGCATGG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]