GgaEX6016393 @ galGal4
Exon Skipping
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8234208-8234986:-
Coord C1 exon
chr18:8234892-8234986
Coord A exon
chr18:8234490-8234609
Coord C2 exon
chr18:8234208-8234357
Length
120 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTGCTGTTTTGCAGGAG
3' ss Score
10.12
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTCTGCTTCGCCCTGAGCATGCTGGGCAGCCCCCGCGTCACGCTGCTGGATGAGCCCTCCACCGGCATGGACCCCAAGGCCAAGCAGCGCATGTG
Seq A exon
GAGGGCGATCCGAGCAGCCTTCAAAAACAAGGAGCGGGCGGCCATCCTGACCACACACTACATGGAGGAGGCGGACGCGGTGTGCGACCGCGTGGCCATCCTGGTGGCCGGGCAGCTCAG
Seq C2 exon
GTGTATAGGCACCGTTCAACACCTGAAGAGTAAATTCGGCAGAGGGTACTTCTTGGAAATGAAATTGAAGGACACAGCAGATGTACAGCAGGTGGAGTACCTGCAGAGGCAGGTCCTGCACATCTTCCCAAACGCAAACCGTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'35-44,'35-43,36-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.7=62.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCGCCCTGAGCATG
R:
TTTCCTGACGGTTTGCGTTTG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]