BtaEX6091130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61961918-61965374:+
Coord C1 exon
chr19:61961918-61962082
Coord A exon
chr19:61962422-61962525
Coord C2 exon
chr19:61965148-61965374
Length
104 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTCTTCTTTAAAGACC
3' ss Score
7.89
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAGAACAATCCTTGGGATCCCTAATGAAGACGCCATGGACAGAGTACGCCCAAGAAACGACTCTGAGATGGTGGGAATTGTGTTCAATGACACTTTCTCATACAGGCTGAAGTTCAGCTGGGGACACAGGGTCCCGATTTTAAGAGAGCACTTCGAGTACTCAG
Seq A exon
ACCACTGTTGGGCTCTACGTGATGAAGCTTTCTGTCTCTTGTCAATATACTGGAAAAACGGGTTTGTGGCTTTTCAAACTGCAATTAATGCTGCAATTATAGAA
Seq C2 exon
GTCACAACGAATCATTCTGTGATGGAAGAGTTGATATCAGTTGTTGGAATAAATATGAGGACACCCCCTTTCATTTCTAAGGGAGAAAGTATAAACGAATGGTTCATTTTTATTTGTATTGTTTATTTCTCCCCTTTTGTGTATGTTGCATCATTAAACATTACAAAGGAACGAAAAAAATTTAAGAAGCTGATGACAGCCATGGGTCTTCAACAGTCAGCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.2=100)
A:
PF126982=ABC2_membrane_3=FE(8.8=100)
C2:
PF126982=ABC2_membrane_3=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCCGATTTTAAGAGAGCA
R:
CTGTTGAAGACCCATGGCTGT
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]