RnoEX0004987 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98364235-98380128:-
Coord C1 exon
chr10:98379964-98380128
Coord A exon
chr10:98377850-98377953
Coord C2 exon
chr10:98364235-98364325
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTGTTCTCAAAGCTC
3' ss Score
8.02
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GAAGAGAAATATTGGCTTTTCCAAACAAAGAAAATATGACAGAGTTCATTTCAAAACATTATGATGATGCGGTGGGGATCATATTCTCCACCGCTTACTCCTACCATCTGAAGTTTATGAAAGGAACCAGGATCCCAATCATAAAGGAGCATCAGGACCACACAG
Seq A exon
CTCATTGTTTTCGATATGAACCTGCCATTTCTTGTGACCTGTCAGCCTTCTGGAGACATGGGTTTGTGGCTCTTCAAGCTGCCATTAACTCCGCCATCATAGAA
Seq C2 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-4/37=3-15
Average complexity
C3
Mappability confidence:
77%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.1=100)
A:
PF126982=ABC2_membrane_3=FE(8.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTTCCAAACAAAGAAAATATG
R:
CTTAAGTGATAACCAATCCCCCA
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]