MmuEX6090808 @ mm9
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:109944624-109947944:-
Coord C1 exon
chr11:109947780-109947944
Coord A exon
chr11:109945476-109945579
Coord C2 exon
chr11:109944624-109944850
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTGTTTTCAAAGCTC
3' ss Score
8.75
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GAAGAAAAATATTGGCTTCTCCGAATGAAGAAAATATGACAGAACTCATTTCAATGCGTTTCAGTGATGTAGTGGGGGTCATATTCACCAACGCTTACTCCTACAACTTGAAGTTCATAAAAGGAGCAAGGATCCCCACCATAAAGGAGCATCAGGACCACACAG
Seq A exon
CTCATTGTCATTCCTATGGAGAGATCATTTATTGTGGCCTTTCAGAATTCTGGAGAGATGGGTTTGTGGCTCTTCAAGCTGCCATTAACGCTGCCATCATAGAA
Seq C2 exon
GTCACAACAAATCACTCAGTGATGGAAGAGATGATGTCACTTACCGGAAAATACATCAAGATAGATTCTTTCGTTGGGCAAGAAGGGACAACGACAGACTGCTTCCTTTTTTTCTGTATCATTCGTTTCTCCCCACTTACCTATTATATCTCAGCTGGTGTTACAAGAGAAAGGAAAAAGATGAAGGGCTTGATGGCAGTGATGGGCCTTCGGGATTCAGCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.1=100)
A:
PF126982=ABC2_membrane_3=FE(8.7=100)
C2:
PF126982=ABC2_membrane_3=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAAGGATCCCCACCATA
R:
CACTGCCATCAAGCCCTTCAT
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: