GgaEX6016332 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8223930-8225848:-
Coord C1 exon
chr18:8225690-8225848
Coord A exon
chr18:8224828-8224928
Coord C2 exon
chr18:8223930-8224156
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTGTTTCCCATAGATA
3' ss Score
12.14
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCATAGCACTAGAAGAGGCAGTAAACGAGCAAAACCTGTCAGCAAGAGGACTTTTTAGGAGTGATGTGATCGGTGTTGTTTTTAAGGATGACTTCTCCTACCACCTCAGATTTCAGAGCTACAGCGTGATATCTCCCATTGAAACCTTTGAACACATCG
Seq A exon
ATACCTGCTATGATTTCTCATCGTCCTTTTGCAAGGTTCCTTTGTACTGGTATGAGGGATTCCTGTCCGTTCAGTCCAGCATTGATGCAGCAGTCATAGAG
Seq C2 exon
ATGAAAATGAACCATTCTGTCTGGGAAGAGATGAAATCAATTAGTGGCATCCGTCTGCAATCACCCTTGATCAAATCCATACGTAAAGTGGGCTATATTTGGTTCACCATTTACAGCATGCTGTGTTTCTCCCCGTATATGTATTTTCTATCAGTGAAAGTTATCAGAGAGAAAAAGAAGCTCAAGGTGTTAATGAAAGCAATGGGTTTACAAGACATCGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCAAAACCTGTCAGCAA
R:
AGCATGCTGTAAATGGTGAACC
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]