GgaEX6016332 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7959421-7961339:-
Coord C1 exon
chr18:7961181-7961339
Coord A exon
chr18:7960319-7960419
Coord C2 exon
chr18:7959421-7959647
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTGTTTCCCATAGATA
3' ss Score
12.14
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCATAGCACTAGAAGAGGCAGTAAACGAGCAAAACCTGTCAGCAAGAGGACTTTTTAGGAGTGATGTGATCGGTGTTGTTTTTAAGGATGACTTCTCCTACCACCTCAGATTTCAGAGCTACAGCGTGATATCTCCCATTGAAACCTTTGAACACATCG
Seq A exon
ATACCTGCTATGATTTCTCATCGTCCTTTTGCAAGGTTCCTTTGTACTGGTATGAGGGATTCCTGTCCGTTCAGTCCAGCATTGATGCAGCAGTCATAGAG
Seq C2 exon
ATGAAAATGAACCATTCTGTCTGGGAAGAGATGAAATCAATTAGTGGCATCCGTCTGCAATCACCCTTGATCAAATCCATACGTAAAGTGGGCTATATTTGGTTCACCATTTACAGCATGCTGTGTTTCTCCCCGTATATGTATTTTCTATCAGTGAAAGTTATCAGAGAGAAAAAGAAGCTCAAGGTGTTAATGAAAGCAATGGGTTTACAAGACATCGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023373-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(25.7=85.2)
A:
PF126982=ABC2_membrane_3=FE(18.4=100)
C2:
PF126982=ABC2_membrane_3=FE(41.9=100),PF131081=DUF3969=PU(71.8=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCAAAACCTGTCAGCAA
R:
AGCATGCTGTAAATGGTGAACC
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]