HsaEX0000244 @ hg19
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67215686-67218838:-
Coord C1 exon
chr17:67218674-67218838
Coord A exon
chr17:67217933-67218036
Coord C2 exon
chr17:67215686-67215912
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTCTTCCTTAAAGAAC
3' ss Score
7.13
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAGAACAGTCATTGGGACACCAGATGAAGAGACCATGGATATAGAACTTCCAAAAAAATACCATGAAATGGTGGGAGTTATATTTAGTGATACTTTCTCATATCGCCTGAAGTTTAATTGGGGATATAGAATCCCAGTTATAAAGGAGCACTCTGAATACACAG
Seq A exon
AACACTGTTGGGCCATGCATGGTGAAATTTTTTGTTACTTGGCAAAGTACTGGCTAAAAGGGTTTGTAGCTTTTCAAGCTGCAATTAATGCTGCAATTATAGAA
Seq C2 exon
GTCACAACAAATCATTCTGTAATGGAGGAGTTGACATCAGTTATTGGAATAAATATGAAGATACCACCTTTCATTTCTAAGGGAGAAATTATGAATGAATGGTTTCATTTTACTTGCTTAGTTTCTTTCTCTTCTTTTATATACTTTGCATCATTAAATGTTGCAAGGGAAAGAGGAAAATTTAAGAAACTGATGACAGTGATGGGTCTCCGAGAGTCAGCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.0=100)
A:
PF126982=ABC2_membrane_3=FE(10.5=100)
C2:
PF126982=ABC2_membrane_3=FE(23.2=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGTTATAAAGGAGCACTCTGA
R:
CTCTCGGAGACCCATCACTGT
Band lengths:
249-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)