BtaEX6091142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62074750-62078722:+
Coord C1 exon
chr19:62074750-62074923
Coord A exon
chr19:62075151-62075264
Coord C2 exon
chr19:62078603-62078722
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTGTATTGTTTTCAGGTT
3' ss Score
10.59
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
AAGAGAACCAAGTCCCAGCTGTGGATCTCTGGCCTCTTCCCCTCTGCGTACTGGTGTGGGCAGGCGCTGGTGGATGTCAGCCTCTACAGTCTCATGCTCCTTGCCATGTATTTGATTTTCTACCTAGCAAACAGAGAGCACATTTATCTCACAAGCCGAATTGTATTTGCTTTG
Seq A exon
GTTGTCCTGACGCTTGGTTATGCGGCTTCACTTGTCTCCCTGATGTACGTGGTAGCATTTATTTTTCGTAAGAGGAGGAAAAATAGCGGCCTTTGGTCATTTTGCTTCTATGTA
Seq C2 exon
GTCACGGTCATCGCATTTGGCATCATTGTGCTATTTGGCTCAGGCGTCCCTGTCCTGATACCTTGCATGGCTTTAGCTCCCTCAGCAACCTTGATTGGATTTATAGCTTTTTTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.7=100)
A:
PF126982=ABC2_membrane_3=FE(10.2=100)
C2:
PF126982=ABC2_membrane_3=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAACCAAGTCCCAGCTGT
R:
GGAGCTAAAGCCATGCAAGGT
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]