GgaEX1004149 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7949157-7949751:-
Coord C1 exon
chr18:7949714-7949751
Coord A exon
chr18:7949437-7949550
Coord C2 exon
chr18:7949157-7949264
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTCATCCTTCTCTCTTTAGATC
3' ss Score
12.66
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCATCTGCCCCATGCAGGCCTTCATCATCCTGCCCTTG
Seq A exon
ATCTTTAGTGCCATTGGTTACGGATTTTCTCTCATCTTCCTCGTCTATTTGATTGCCTTTATATTTCGCAAGGGTCGAACCAATCGTTACCTGTGTTCTTTTGTCTTTGTTCTG
Seq C2 exon
GTGAACTTCACTCTCCGCATGTTCAGTTTCAGACAGGGTTTCTTCTATATCTTCTCCACTTTGATGCCCCCATATCCGCTGCTGGGCTGGTTGACTTTCTCTACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCAGGCCTTCATCATC
R:
TGCTGTAGAGAAAGTCAACCAGC
Band lengths:
138-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]