RnoEX0004975 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98335116-98342520:-
Coord C1 exon
chr10:98342347-98342520
Coord A exon
chr10:98341523-98341636
Coord C2 exon
chr10:98335116-98335181
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTGTTGGTTTCAGATC
3' ss Score
11.72
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AACAGAGCTCAGTTCCAGCTGTGGATTTCAGGGCTCTCCCCTTCTGCATACTGGTTTGGTCATGCTCTTTTTGAGATCCCAGTCTACTCTGCACTCATTTTGTCTGTGTACATTGCTTTCTATTTCTCGGCCCCTCCAGAGAGTATGATCACAACTAGAGATCTGTTTATTCAG
Seq A exon
ATCCTCTATGCTGGTGGCTATGCTATGTCAGTTATTTTCATGATGTATGTGATTTCATTCATTTGTCGCAAGGGGAGAAAAAATAGTGGCATTTGGTCACTTTGCTTCTATATT
Seq C2 exon
AATCATGAGTTTCCTGAAATAAGTTTGTACCCAGAAAGGTACTATACCTATCTGTTTTTCCTAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-24/37=23-26
Average complexity
C2
Mappability confidence:
95%=96=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=FE(10.1=100)
C2:
PF126982=ABC2_membrane_3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGTTCCAGCTGTGG
R:
AGCTAGGAAAAACAGATAGGTATAGT
Band lengths:
235-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]