BtaEX6091165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62136263-62137333:+
Coord C1 exon
chr19:62136263-62136436
Coord A exon
chr19:62136947-62137060
Coord C2 exon
chr19:62137214-62137333
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTAGTATTTCTATTTTCAGACC
3' ss Score
7.12
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
AAAAAAGTTCACTCCCAGCTGCGGATTTCAGGCCTCTACCCTTCCGCTTACTGGTTTGGGCAGGCGCTGGTGGACGTTCCCCTGTACTTCTTGATCCTCCTTCTAATGCAAATAATGGATTATGTTTTTAACCCAGACGAGTTTGTGTTTATCATTCAAAACCTGGCAGTTCAG
Seq A exon
ACCCTGTGTATAATTGGCTATGTCTCATCTCTTGTTCTCCTGACGTATGTGATTTCATTCATTTTCCGCCACGGGAGGAAGAACAGTGGCATTTGGTCATTTTTCTTCTTAGTT
Seq C2 exon
GTCACCTTCTTCACCATTGTTGCTAATTATCTGAATGAATACGGATTCCTAGGGCTGTTTCTCTGCACCATATTAATACCACCCTTCACACTGATTGGTGTTCAACTCATTTTTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.9=100)
A:
PF126982=ABC2_membrane_3=FE(12.9=100)
C2:
PF126982=ABC2_membrane_3=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTTCACTCCCAGCTGCG
R:
TGGTGCAGAGAAACAGCCCTA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]