MmuEX6090853 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110120664-110130738:-
Coord C1 exon
chr11:110130565-110130738
Coord A exon
chr11:110127361-110127474
Coord C2 exon
chr11:110120664-110120783
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGCGTGTTTCTGTTTTCAGATC
3' ss Score
12.1
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AAAAAAGTTCTTTCCCAGCTGTGGACTTCAGGCCTTTACCCGTCTGCTTACTGGTGTGGACAGGCTCTGGTGGACATTCCCATATACTTCCTCATTCTCTTTCTCATGCAAATAATGGACAGTGTTTTTAGTTCTGAGGAGTTTATATCTGTGATGGAGAGCCTGTTGATTCAG
Seq A exon
ATCCCATGTAGTATTGGCTATGCATCATCTCTCATATTCATGACTTATGTGATTTCATTCATTTTTCGTAATGGCAGAAAAAATAGTGGCATCTGGTCATTTTTCTTCCTAATT
Seq C2 exon
GTCACCATCTTCTTTATCATTGCTACTGACATAAATGAATACGGCTTTCTAGAGCTGCTAATCTGCACCTTTTTAGTCCCTCCTTTCACACTGATTGGCTCACTATTGATTTTTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'30-32,'30-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.0=100)
A:
PF126982=ABC2_membrane_3=FE(12.3=100)
C2:
PF126982=ABC2_membrane_3=FE(13.0=100)
Main Skipping Isoform:
ENSMUST00000044850fB5147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTTACCCGTCTGCTTAC
R:
AGCCAATCAGTGTGAAAGGAGG
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types