GgaEX1004149 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8213666-8214393:-
Coord C1 exon
chr18:8214223-8214393
Coord A exon
chr18:8213946-8214059
Coord C2 exon
chr18:8213666-8213773
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTCATCCTTCTCTCTTTAGATC
3' ss Score
12.66
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATAAAGGCTCATGCCCAGCTACGGGTCTCGGGGCTCTTCCCCTCAGCATACTGGTGTGGGCAGGCACTGGTGGACGTCCCACTCTTCTGGGCCCTGATGTGCCTCATGTTCGTGGTCGTGCTGCTCTTCAACCGCATCTGCCCCATGCAGGCCTTCATCATCCTGCCCTTG
Seq A exon
ATCTTTAGTGCCATTGGTTACGGATTTTCTCTCATCTTCCTCGTCTATTTGATTGCCTTTATATTTCGCAAGGGTCGAACCAATCGTTACCTGTGTTCTTTTGTCTTTGTTCTG
Seq C2 exon
GTGAACTTCACTCTCCGCATGTTCAGTTTCAGACAGGGTTTCTTCTATATCTTCTCCACTTTGATGCCCCCATATCCGCTGCTGGGCTGGTTGACTTTCTCTACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'26-24,'26-23,27-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTTCCCCTCAGCATACT
R:
AGAGAAAGTCAACCAGCCCAG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]