RnoEX6050336 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98492678-98498104:-
Coord C1 exon
chr10:98497931-98498104
Coord A exon
chr10:98497635-98497748
Coord C2 exon
chr10:98492678-98492797
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTATCTGAATTATCTCCAGGTC
3' ss Score
7.94
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AAGAAAGCTGACTCCCAGCTGTGGATTTCTGGCCTCTACCCTTCTGCCTACTGGTGTGGGCAGGCGCTCGTGGACATTACTCTTCTCAGTGGAATTCTTCTCACGGGCTACATCACGTTATACACGACAAAACTGATGCACATCTACTTGACAGGCGAAATCGTGCTGTCTATA
Seq A exon
GTCCTTCTCGCTTTTGGCTGTGCAGCTTCTCTTGTCTTCTTGACGTACGTGATATCATTTGTTTTTGGCAAAAAGAGGAAAAACAGCGGCCTCTGGTCAATTTGCTTCTTTATT
Seq C2 exon
GTCATAACGATTATGTTTGACACGGTTTTGATGGATCCCTTCAATGAGGCACTGCTTATTTCTGCCATGATGTTAGTTCCTTCCTTTTCATTGAATGCGCTCCTGATTGTCTTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'30-36,'30-35,31-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.7=100)
A:
PF126982=ABC2_membrane_3=FE(10.2=100)
C2:
PF126982=ABC2_membrane_3=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTACCCTTCTGCCTACT
R:
CCAAGACAATCAGGAGCGCAT
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]