BtaEX6091154 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62046908-62049086:+
Coord C1 exon
chr19:62046908-62047093
Coord A exon
chr19:62047372-62047519
Coord C2 exon
chr19:62048918-62049086
Length
148 bp
Sequences
Splice sites
3' ss Seq
TACTTTTGTTTGAATCTTAGATT
3' ss Score
6.38
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATCGCTTTGGCATTCCTGATGACCGTGCTGCTAAAGAAAACCATCCTCACCAGTTTGGTTGTGTTTCTCCTCACCCTCTTCTGGGGGGGTGTGGGATTCAGTGCGTTTTACCAACAACTTCCTTCACCTTTGAAGTGGATTTTCAGTATCTGTAGCCCCTTTGCCTTCAGTGCTGGAATAAACCAG
Seq A exon
ATTATCCACCTGGATTATACTATGAATGGTGTCATTTTTCCTGACGCTTCTGGAGACTCATATATAATGATAGCTACTTTTTCCATATTGACTTTCGATGCCCTTTTATACTTGGCATTGGCGTTATACTTTGACAAAATCCTACCCT
Seq C2 exon
ATGGAAACGAGTCCCATTATTCGCCATTGTTTTTCCTGAACTCGTCACCTTGCTTCCAACACCGGAGGACTGGTAGTCACGTCGCCTGGAAAGACGTGGACCCTGAGCCCGCCGCGGGTGATTACTGTGAGCCCGTAGCCCCAGAATTCCACGGGAGAGAAGCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'10-7,'10-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCATTCCTGATGACCGTG
R:
GTGTTGGAAGCAAGGTGACGA
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]