GgaEX6016335 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7957205-7958862:-
Coord C1 exon
chr18:7958677-7958862
Coord A exon
chr18:7957975-7958107
Coord C2 exon
chr18:7957205-7957361
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTCTGTCTAGATT
3' ss Score
8.57
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTCACTTCTGTTTCATGCTCAGCTCCTTGTTAAAGCAGCCTCACATTACCAGTTTTGTGGGATTTTTCCTTCACGTCGTCTTTGGCTCACTGGGCTTCATGACGTTCTTTGAAGAAGTGCCACCATCTTTGGAATGGGTCTTTAACCTCTTCAGTCCTTACACTTTTACAGCTGGCATCTCAAAG
Seq A exon
ATTGTAAAATTAGAAAAATATGGACCGACTGTCGCAGCAGAGTTGTACCCTTTCTTTAACCTATATGGCATGCTGATCCTGGACAGCATTCTGTATTTGCTGCTGGCCATCTACTTTGATAAGGTTTTGCCTG
Seq C2 exon
GCAAATACGGCGTGCCGTACCCCCCGCTGTTCTTTCTGAGGCCGTCGTATTGGCTGCAGTGGGGCAGCAAGCGCAGCACCCAGCCTGACCCCATCCCTGTCCCTGGCTGTGACACCGAGCCCATGCCTGAGGGCTTCGAGGGGAAGGAGGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021391-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(58.9=98.2)
A:
PF126982=ABC2_membrane_3=PD(38.9=82.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGCTCACTGGGCTTCAT
R:
CTTCCCCTCGAAGCCCTCAG
Band lengths:
252-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]