MmuEX6090838 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110148741-110154563:-
Coord C1 exon
chr11:110154378-110154563
Coord A exon
chr11:110151946-110152093
Coord C2 exon
chr11:110148741-110148909
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTATGCATCTCTTTTTCAGCTT
3' ss Score
9.3
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGATAAAGAAACCGTTTCTTACTGGCTTGGCTATCTTCATCCTTACCGTCTTCTGGGGAAGTCTGGGATTCACAGCGTTATACAAACATCTTCCTGCCTTTGTGGAATGGACCTTGTGTTTTCTTAGCCCCTTTGCCTTTACCACTGGAATGGCCCAG
Seq A exon
CTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTACCTAATCATGGCCACGCTCTTCATGCTGGTTTTGGATGCTCTTCTCTATTTGGTACTGGCGTTATATTTTGACAAAATTACACTCA
Seq C2 exon
GTAAGTACGGACATCAACGGTCTCCATTGTTTTTCCTGAAGTCGTCTTACTGGTTTAAACGCAGAGGAGCTAGTCACGTGGTCCTTGAGAATGAAATAGATTCGGATCCCTCGCTGAATGACTCACTGGAACCAGTGTCTCCAGAATTCCAGGGGAAAGAAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCTGGGATTCACAGCG
R:
TCTGGAGACACTGGTTCCAGT
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types