RnoEX6050298 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98457003-98460785:-
Coord C1 exon
chr10:98460600-98460785
Coord A exon
chr10:98458128-98458275
Coord C2 exon
chr10:98457003-98457171
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTATGCATCTCTTTTTCAGCTT
3' ss Score
8.92
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGTTAAAGAAACCATTTCTTACTGGCTTGGCTGTCTTCCTCCTTACCGTCTTCTGGGGAAGCCTGGGATTCACAGCATTGTACAAACATCTTCCTGCTTTTATGGAATGGATATTGTGTTTTCTTAGCCCCTTTGCCTTTATTAATGGAATGGCCCAG
Seq A exon
CTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTACCTAATCCTGGCCACCCTCTTCATGTTGGTTTTGGATGCTCTTCTCTATTTGGCACTGGCATTGTATTTTGACAAGATTTTACTCA
Seq C2 exon
GTAAGTACGGACATCAGCGTTCTCCGTTGTTTTTCCTGAAGTCATCTTACTGGTTTCAACGCAGAGGAGCTGATCATGTGGTCCTTGAGAATGAAATAGACTCTGCTCCTTCACTCAATGACTCATTGGAACCCGTGTCTCCAGAATTCCAGGGGAAAGAAGCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGGATTCACAGCATTG
R:
CTGGAGACACGGGTTCCAATG
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]