BtaEX6091178 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62111410-62113842:+
Coord C1 exon
chr19:62111410-62111595
Coord A exon
chr19:62113103-62113250
Coord C2 exon
chr19:62113674-62113842
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTTTTTTTTTCCAGCTT
3' ss Score
9.93
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATAACGTTAGCTTTCCTGATGAGCGTGTTAGTGAAGAAACCCTTCCTTACGGGGCTGGTGGTCTTCCTCCTCACTGTCTTCTGGGGGAGCCTGGGATTCACAGCTTTGTACAGACGCCTTCCTGCGGCTTTGGAGTGGACCTTATGTCTTCTTAGCCCCTTTGCTTTCACTGCTGGAATGGCCCAG
Seq A exon
CTTATCCATTTGGACTACGACGTGAATTCTAACATCCATTCAGATTCTCCAAACGACCAGTACCTCATAATAGCTACTATTTTCATGCTGGTTTTTGATGCTCTTCTCTATTTGGTATTGACGTTGTATTTGGACAAAATTTTGCCCA
Seq C2 exon
CTGAATATGGACGTCAGCAGCCTCCCTGGTTTTTCCTTAAATCCTCTTCTTGGTTCCAACGCCGAAGGGCTGATCGTGCGGCCCTCGAGAATGACATCGATCCAGATTCTCCATCCGATGACTCTTTTGAACCAGTGTCTGCAGAATTCCACGGGAAAGAAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTACAGACGCCTTCCTGC
R:
CTGATGGCTTCTTTCCCGTGG
Band lengths:
251-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]