GgaEX6016354 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8198697-8199853:-
Coord C1 exon
chr18:8199668-8199853
Coord A exon
chr18:8199377-8199524
Coord C2 exon
chr18:8198697-8198868
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGCCCTTTGTTTCAGATT
3' ss Score
11.38
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GTCCACCTGGTCTTCATGCTCTGCTCCCTCCTGAGAACATCCAAACTTGTGGGCTCCCTGGGATTCCTCATCACCTTTCTCTTTGGCTGCCTGAGCCTCTCAGTGCTGATAGAAAAGCTTCCAGAACCTTTGCAGTGGTTTCTCAGCCTCTTTTGTCCTTTTGCATTCAATGTTGGCATTGCGAAG
Seq A exon
ATTTTCAGTTTGGAAAGATATGGAATAGGTTTCTCTTTTTCTAACATTATGGAGGAATCATACTTTTTACTTTCGACCTACATTATGCTGACCTTTGACTCGGTCTTGTACATGCTGTTAGCTATCTACTTCGACAAAGTTCTGCAGG
Seq C2 exon
GTAAATACGGCATCCCAGCTCCACCGCTTTTCTGCCTGAAGCCCTCGTATTGGATGCAGAGCAGGAGGGGCTCTCCTGGGGAAGGGCACAGAGGTGCTGGGAGCCCTGAGGAGCCCCCAGGGGACAACGTGGAGCCAGTGCCCCTCGAGTTCAGGGGGAAAGAGGCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.466
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.9=100)
A:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTGGTCTTCATGCTCT
R:
CTCTGCATCCAATACGAGGGC
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]