RnoEX0004950 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98283456-98286340:-
Coord C1 exon
chr10:98286155-98286340
Coord A exon
chr10:98285425-98285572
Coord C2 exon
chr10:98283456-98283624
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCAAAAAATTTCAGCTC
3' ss Score
6.32
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATCTCTTTGGCCTTCCTAATGAGCGTCTTGGTGAGGAAGTCTGTCCTCACTGGCCTGACTGTGTTCCTTCTCACCATCTTCTGGGGAAGCCTCGGTTTCACAGCCCTGTACAGATATCTCCCTGCACCTTTGGAATGGACTCTCAGTCTTTTTAGCCCCTTCGCCTTCACACTAGGAATGGCCCAG
Seq A exon
CTCTTACGCGTGGACTATGATTTAAATTCTAACGCACCCCCTGATCCAGCTGGTAGCTCAAATCTGATTGCAGCAACCAATTTCATGCTGGCATTTGATGCGCTTTTGTATCTGGCCCTGACGATGTACTTTGAAAAAGTTCTGCCAA
Seq C2 exon
ATGAGTATGGACACCAGCGGTCTCCCCTGTTTTTCCTGAAACCCTCATTTTGGGTACAACCACGAAAGCCTGCTCACGTGATTCTTGAAGATGGAATAGATCCCGCTCCTTTATCAGGTGGCTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGTTTCACAGCCCTGTAC
R:
CTTTCCCGTGGAATTCTGGGG
Band lengths:
255-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]