MmuEX6090788 @ mm9
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109832999-109836007:-
Coord C1 exon
chr11:109835822-109836007
Coord A exon
chr11:109834985-109835132
Coord C2 exon
chr11:109832999-109833167
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTAAAAACTTTCAGCTC
3' ss Score
6.73
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATCACTTTGGCTTTCCTAATGAGTGCCTTGGTGAGGAAGTCTGTCCTCACTGGCCTGTCTGTGTTTCTTCTCACCATCTTCTGGGGAAGTCTAGGCTTCACATCCCTGTACAGATACCTCCCTGCACCTGTGGAATGGACTCTCAGTCTCTTTAGCCCCTTTGCCTTCACACTAGGAATGGCCCAG
Seq A exon
CTCTTACGTGTGGATTATGATTTAAATTCTAATGCACCCCCTGATCCAGCCAGTGGCTCAAATCTGATTATAGCAACCAATTTCATGCTGGTATTTGATGCGTTTTTGTATCTGGCCCTGATGATGTACTTCGAAAAAGTTCTGCCAA
Seq C2 exon
ATGAATACGGACATCAGCACTCTCCCCTGTTTTTCCTGAAATCTTCATTTTGGCTACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGATGGAATAGACCCCGTTCCTTCATCAGGTGACTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGGAAGTCTAGGCTTCA
R:
GAATTCTGGGGACACCGGTTC
Band lengths:
256-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: