DreEX0009958 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38651336-38654231:+
Coord C1 exon
chr12:38651336-38651524
Coord A exon
chr12:38652930-38653077
Coord C2 exon
chr12:38654054-38654231
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTTGTATGTGTAGGTA
3' ss Score
8.79
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
ATTTTCTTCTCCTTCATGTTGACCCCGTTGTTTAAGAAGCCCAAGTTTGCCAGTACGGTGGGCTCGATGCTGACGGTGGTGTTTGGCTGTCTGTCGCTCTTTACTGTGTTGATGAGAGATTTCCCTCAGTCTGCTGTGTGGCTCCTCTGCCTTCTGTCCCCCAGCGCTTTTTCTATCGGCATCGCCCAG
Seq A exon
GTAGTGTATCTGGAAGCTCAAGGGGATGGCGCAGTGTTCTCATCTCTGGGCAATGGTCCTCACGCTCTCTATGTTCCACTGGTCATGCTGTTTTTGGACTGCATCCTCTACCTGCTTTTAGCCATTTACCTGGACCAAGTGCTACCAG
Seq C2 exon
GCGAGTTTGGCACAAAACGCTCAGTGTTGTATTTTCTAAAACCATCCTATTGGTCCAAGCGGAGGAAGCGATATGTCGAGGTGAGCTCTGTGTATGAGGGCGAAGTAAACGGGACGCCTGCAATCGACGAATCGGTGGAGGCTGTTTCTCCTGAGTTCAGAGGCAAAGAGGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.1=100)
A:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGCTGTCTGTCGCTCTT
R:
CCTCCACCGATTCGTCGATTG
Band lengths:
250-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]