MmuEX6090907 @ mm9
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110171451-110174831:-
Coord C1 exon
chr11:110174643-110174831
Coord A exon
chr11:110172625-110172772
Coord C2 exon
chr11:110171451-110171619
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTTCTCCTTTAGGTC
3' ss Score
13.98
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGTTTTTTGCTTTAATGCTGACGCCTCTTTTTAAAAAATCAAAACACGTGGGAGTCGTTGAGTTTTTTGTCACCGTGGTGTTTGGATTTGTTGGCCTGCTGATTGTCCTCATAGAAAGTTTCCCCAGGTCGCTGGTGTGGCTCTTCAGTCCTTTGTGTCAGTGTGCCTTTCTGATTGGGATTGCACAG
Seq A exon
GTCATGCATTTAGAAGATTTTAATGAGGGTGCCTTATTTTCTAATTTGACTGAAGGTCCCTATCCTCTAATTATTACTATTATCATGCTAGCTCTTGACAGTGTGTTCTATGTCCTCCTGGCTGTGTATCTCGACCAAGTCATTCCAG
Seq C2 exon
GGGAATTTGGCTTGAGGAGGTCATCTTTGTATTTTTTGAAGCCATCGTATTGGTCAAAAAACAAAAGAAACTATAAGGAGCTATCGGAGGGCAACATTAATGGCAATATTAGTCTCAATGAAATTGTTGAGCCCGTTTCTTCAGAATTTATAGGGAAAGAAGCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.0=100)
A:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGGAGTCGTTGAGTTT
R:
GCCATTAATGTTGCCCTCCGA
Band lengths:
248-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: