RnoEX0004885 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98617473-98620778:-
Coord C1 exon
chr10:98620590-98620778
Coord A exon
chr10:98618527-98618674
Coord C2 exon
chr10:98617473-98617641
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTCCTTTCAGGTC
3' ss Score
14.09
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGTTTTTTGCTTTAATGTTGACGCCTCTTTTTAAAAAATCAAAGCACGTGGGAGTCGTTGAGTTTTTTGTCACCGTGGTGTTTGGCTTTGTCGGCCTGTTGATAGTCCTCGTAGAAAGTTTCCCCAGGTCGCTAGTGTGGCTCTTCAGTCCTTTGTGTCAGTGCGCCTTTCTGATTGGGATTGCACAG
Seq A exon
GTCATGCATTTAGAAGATTTCAATGAAGGAGCCTTATTTTCTAGTTTGACTGAAGGCCCCTACCCGCTAATTATCACCCTTACCATGCTCGCTCTGGACAGTGTGTTCTATGCCCTGCTGGCTGTGTACCTTGATCAGGTCATCCCAG
Seq C2 exon
GGGAATTTGGCTTGAGGAGGTCATCTTTGTACTTCCTAAAGCCATCATATTGGTCAAAAAACAAAAGGAACTATAAGGAGCTATCAGAGGGCAACATCAATGGGAATATTAGTCTCAATGAAATTGTTGAGCCCGTTTCTTCAGAATTTATAGGAAAAGAAGCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.0=100)
A:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAAAGCACGTGGGAGTCG
R:
TGTTGCCCTCTGATAGCTCCT
Band lengths:
248-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]