GgaEX0005802 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7983805-7984912:-
Coord C1 exon
chr18:7984724-7984912
Coord A exon
chr18:7984275-7984422
Coord C2 exon
chr18:7983805-7983973
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTGTTTGTTGGCAGGTG
3' ss Score
10.76
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTATTCTTTGCCCTGATGCTGACGCCCCTCTTTAAGAAGTCAAAGCACGTGGGTATCGTTGAGTTCCTGGCCACGCTGGCTTTTGGGTTTGTGGGGCTGAACATCGTCCTGCTGGAAGACTTCCCCAAATCCTTCGTGTGGCTCTTCAGCCCTTTGTGCCAATGCAGTTTCCTGATCGGCATCGCGCAG
Seq A exon
GTGATGCATTTAGAAGATTATGAAGACGGAGCAACGTTTTCCAATCTAAATCACGGTCCTTACCCACTCTTTATCTCCTTAATTCTACTGGTGCTGGACAGCATATTTTACCTGCTGGCAGCTGTCTACCTCGATCAAGTTATTCCAG
Seq C2 exon
GGGAGTTCGGACTGCGCCGCTCATCGTTTTTCTTTATGAAGCCCTCATTTTGGTCAAAGCGCAGGAAGAATTACGAGGAGTTGTATGAGAGCAGCATCAATGGCAACCTCAGCTGCAGTGAGATGGTCGAGCCCGTGCCATCCGAGTTCCAGGGGAAGGAAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.9=100)
A:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGTGGGTATCGTTGAGTT
R:
TTGCCATTGATGCTGCTCTCA
Band lengths:
251-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]