BtaEX6091184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62104443-62107871:+
Coord C1 exon
chr19:62104443-62104544
Coord A exon
chr19:62106387-62106594
Coord C2 exon
chr19:62107707-62107871
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCCCTGCTCTGCAGGAA
3' ss Score
10.57
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCAGGATGAGCAAGAGGCACTTCAGCGTGGGCCAGCAAACGAGGGCGCTTCTTGGCAAGAATTTTCTTAAGAAATGGAGGATGAAAAGAGAGACCTTGTCG
Seq A exon
GAATGGCTCTTCTCCTGTCTCCTAGTACTGTTTGCTCATCTGTTTTCCTCTAATTTACACCAAGTTAATGACTTCCCTCAACTGCCCGCTGTGAACTTGGGACGGGTAGATAATTTTAATGATTCTGATTACATTATTGCATTTGCTCCTGAATCCAAGACCACCCAGGAGATAATGAACAAGTTGGCTTCTGCCCCTTTCATAAAAG
Seq C2 exon
GGAGGACCATCTCGGGCTGGCCTGATGAGCAGAGCATGGGCGAGCTGGAGCTAAACTATTCTACAGATGCGATGAGAGTCATCTTTAACGACGCCTTCTCATACCATTTGAAGTTTTTGTGGGGACATAGAATCCCCACGATGAAGGAGCACAGAGACCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
A:
PF126982=ABC2_membrane_3=FE(17.6=100)
C2:
PF126982=ABC2_membrane_3=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGATGAGCAAGAGGC
R:
GGTCTCTGTGCTCCTTCATCG
Band lengths:
261-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]