MmuEX6090834 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110158954-110166042:-
Coord C1 exon
chr11:110165897-110166042
Coord A exon
chr11:110163171-110163378
Coord C2 exon
chr11:110158954-110159057
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCATTACTATATAGGAA
3' ss Score
7.26
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ACTTTCACATCTACTTCCTTGATGTCCTTTAACAAAACAAACAAGTCAAAATGAGGAAGAGACACTTGAGACTGGGTCAGCAAATGTGGGCGCTTCTCTGCAAGAACTGGCTCAGAAAGTTCAGGATGAGAAGAGAGACCCTCCTG
Seq A exon
GAATGGCTTTTCTCACTTCTTCTAATATTGTTTGTATATCAATTATCCTCCAATTTGCATCAAGTTCATGACGCTCCTGAAATGTCTGTGGTGGATCTGGGACGTGTTGATAACTTTAACGATTCTAATTATATGATGGTGTTTGCTCCTGAGTCCGAAGCCACCCATGAGATAATGAACAAAGTGGCCTCAGCTCCATTCATGAAAG
Seq C2 exon
CTCCTTGTGAACCACTGAACAATAAAATGATTTGTGAAAACTCAGCCTTCTGGGAAAAGGGCTTTGTAGCCTTTCAAGCTGCCATTAATGCTGGTATCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'2-2,'2-1,3-2=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
A:
PF126982=ABC2_membrane_3=FE(17.6=100)
C2:
PF126982=ABC2_membrane_3=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCACATCTACTTCCTTGATGTCC
R:
TGATACCAGCATTAATGGCAGCT
Band lengths:
244-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types