BtaEX6091531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20662751-20676900:-
Coord C1 exon
chr24:20676708-20676900
Coord A exon
chr24:20671390-20671564
Coord C2 exon
chr24:20662751-20662912
Length
175 bp
Sequences
Splice sites
3' ss Seq
TAACCCCCTTGCTATTGCAGTCT
3' ss Score
6.95
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTCCACTCCTTTCTCCTCTTTATGGGCCACCCACCGTATGCGATTCGGGAAGTGAACATAAACAAGTTCTGCAGGATCATCAGTGAGTTTGCACTGGAGTACCGAACCACCAGGGAGAGAGTTCTGCAGCAGAAACAGAAACGGGCCAACCACAGAGAGAGAAACAAGACCCGGGGGAAGATGATCACTGAT
Seq A exon
TCTGGCAAGTTCTCTGGCGGTTCCCCAGCGCCCCTGAGCCAGCCGCAGGGCCTGAGCTACGCGGAGGATGCTGCTGAGCACGAGAACATGAAGGCTGTGCTGAAGACCTCGTCCCCTGCCGTGGAGGACGCCACCCCGGCGCTGGGCGTCCGCACCCGCAGCCGTGCGAGCCGAG
Seq C2 exon
GATCCGCTAGTTCCTGGACTATGGGCATGGATGACTCGCCTAATGTCACGGATGATGCAGCTGATGAGATCATGGACCGCATCGTCAAGTCGGCCACCCAAGTGCCCAGTCAGCGAGTGGTGCCGCGGGAGAGGAAGCGTTCCCGCGCCAACCGGAAGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'36-36,'36-35,38-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=0.959 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCTTTATGGGCCACCC
R:
CAGCTGCATCATCCGTGACAT
Band lengths:
244-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]