HsaEX0025779 @ hg38
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr18:36755119-36769426:+
Coord C1 exon
chr18:36755119-36755311
Coord A exon
chr18:36760608-36760782
Coord C2 exon
chr18:36769265-36769426
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCCTTGGTTTTGCAGTCT
3' ss Score
8.73
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
ATTCCACTCCTTTTTACTCTTTATGGGCCATCCACCTTATGCAATTCGGGAAGTGAACATAAACAAATTCTGCAGGATTATTAGTGAATTTGCACTAGAGTATCGCACAACCAGGGAAAGGGTTTTGCAGCAGAAACAGAAACGGGCCAACCACAGAGAGAGAAATAAGACCAGAGGGAAGATGATCACCGAT
Seq A exon
TCTGGCAAGTTCTCCGGCAGTTCTCCGGCGCCCCCAAGCCAGCCGCAGGGTCTGAGCTATGCGGAGGACGCGGCTGAGCACGAGAACATGAAGGCTGTGCTGAAAACCTCGTCCCCCTCCGTGGAGGACGCCACCCCCGCGCTGGGCGTCCGCACACGCAGCCGAGCAAGCCGAG
Seq C2 exon
GATCCACTAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCACAGATGATGCAGCTGATGAGATCATGGACCGCATCGTCAAGTCAGCCACCCAAGTGCCCAGTCAGCGAGTGGTGCCGAGGGAGAGGAAACGATCCCGGGCCAACCGGAAATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775_MULTIEX2-17/18=15-18
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=1.000 C2=0.952
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(12.2=53.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATCCACCTTATGCAAT
R:
GACGATGCGGTCCATGATCTC
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development